HOWTO - GPT/UEFI install with full disk encryption: BTRFSonLUKS with separate root, home and pkg subvolumes; hibernation with a swapfile; auto-snapshots with easy system rollback (GUI); boot into snapshots

Shouldn’t be a problem. See here and here.

You’d end up with rEFInd as the boot-loader which let’s you choose between Windows or your fully encrypted EOS. This way you would only have to enter your luks password once if you really want to load EOS. Tested this myself with Win8 and EOS.

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