Boot errors after update

This is the output of [root@EndeavourOS /]# sudo journalctl --since="2022-03-15 18:00:00" > logssince20220315.txt (covers everything since I decided to make this thread after not trying to boot into linux for ~2 weeks, more makes the filesize explode fast), please let me know if I should use other options instead. File turned out to be a bit too large for pastebin, I hope dropbox is fine:

You are getting tons of i/o errors. That would most commonly indicate your filesystem is full or corrupted.

1 Like

Hm. As of right now df -h gives me /dev/sdb2 932G 916G 14G 99% /mnt for the SSD in question. I do remember just before the update via pacman --root /mnt --cachedir /mnt/var/cache/pacman/pkg -Syu on March 20th there were ~9.9GB free (which caused the update to fail).

That’s when I removed some btrfs snapshots to free up space (smart move, I’m aware now ;; ), update went through and now we’re at the above.

So that would explain some of them, but most definitely not the ones from today/yesterday after around ~1800).

Assuming the filesystem is somehow corrupted, how would we find out for sure & how should trying to fix that be approached? Accessing the data from the live medium seemed completely fine so far if that helps.

e: This section from here onwards was from today when free space was most definitely available:

-- Boot 8b9e0e646fe14b4b947845de3820c26a --
Mar 21 12:47:45 EndeavourOS kernel: microcode: microcode updated early to revision 0x28, date = 2019-11-12

e2: Since I saw a lot of /usr/lib/ related errors in there I thought I’d pacman -Syu via chroot again and then see if I can resolve the ldconfig complaints in there I mentioned earlier. This time around I got Bus errors that way too.

This did not happen before, the output for pacman -Syu that I showed in an earlier post looked a lot more… normal when it was a smaller update.

[root@EndeavourOS /]# pacman -Syu
:: Synchronizing package databases...
 core is up to date
 extra                                                                                                      1718.0 KiB  4.19 MiB/s 00:00 [------------------------------------------------------------------------------------] 100%
 community                                                                                                     6.6 MiB  7.62 MiB/s 00:01 [------------------------------------------------------------------------------------] 100%
 multilib                                                                                                    171.8 KiB  1292 KiB/s 00:00 [------------------------------------------------------------------------------------] 100%
:: Starting full system upgrade...
resolving dependencies...
looking for conflicting packages...

Package (16)                      Old Version     New Version     Net Change  Download Size

extra/apache                      2.4.52-1        2.4.53-1         -0.01 MiB       1.68 MiB
extra/chromium                    99.0.4844.74-1  99.0.4844.82-1    0.00 MiB      81.58 MiB
extra/ffcall                                      2.4-1             0.50 MiB       0.06 MiB
extra/imagemagick                 7.1.0.27-1      7.1.0.28-1        0.00 MiB       2.81 MiB
multilib/lib32-vulkan-icd-loader  1.3.207-1       1.3.208-1         0.00 MiB       0.13 MiB
extra/libsynctex                  2021.59745-1    2021.59745-2      0.00 MiB       0.05 MiB
extra/python-markupsafe           2.0.1-3         2.1.0-1           0.00 MiB       0.02 MiB
extra/python-pyparsing            3.0.2-1         3.0.3-1           0.00 MiB       0.16 MiB
extra/python-setuptools           1:59.3.0-1      1:59.4.0-1        0.00 MiB       0.55 MiB
extra/python-urllib3              1.26.8-1        1.26.9-1          0.00 MiB       0.18 MiB
extra/texlive-bibtexextra         2021.61406-1    2021.62705-1      1.41 MiB       3.46 MiB
extra/texlive-bin                 2021.59745-1    2021.59745-2     -0.12 MiB      14.10 MiB
extra/texlive-core                2021.61403-1    2021.62793-1      1.61 MiB     148.98 MiB
extra/texlive-fontsextra          2021.61408-1    2021.62623-1     16.46 MiB     508.85 MiB
extra/texlive-latexextra          2021.61405-1    2021.62806-1      3.52 MiB      14.58 MiB
extra/vulkan-icd-loader           1.3.207-1       1.3.208-1         0.00 MiB       0.12 MiB

Total Download Size:    777.30 MiB
Total Installed Size:  2198.60 MiB
Net Upgrade Size:        23.38 MiB

:: Proceed with installation? [Y/n] 
:: Retrieving packages...
 texlive-latexextra-2021.62806-1-any                                                                          14.6 MiB  7.48 MiB/s 00:02 [------------------------------------------------------------------------------------] 100%
 texlive-bin-2021.59745-2-x86_64                                                                              14.1 MiB  4.20 MiB/s 00:03 [------------------------------------------------------------------------------------] 100%
 texlive-bibtexextra-2021.62705-1-any                                                                          3.5 MiB  2.42 MiB/s 00:01 [------------------------------------------------------------------------------------] 100%
 apache-2.4.53-1-x86_64                                                                                     1715.6 KiB   475 KiB/s 00:04 [------------------------------------------------------------------------------------] 100%
 python-setuptools-1:59.4.0-1-any                                                                            562.5 KiB   420 KiB/s 00:01 [------------------------------------------------------------------------------------] 100%
 imagemagick-7.1.0.28-1-x86_64                                                                                 2.8 MiB   493 KiB/s 00:06 [------------------------------------------------------------------------------------] 100%
 python-urllib3-1.26.9-1-any                                                                                 184.6 KiB   306 KiB/s 00:01 [------------------------------------------------------------------------------------] 100%
 python-pyparsing-3.0.3-1-any                                                                                162.0 KiB   267 KiB/s 00:01 [------------------------------------------------------------------------------------] 100%
 lib32-vulkan-icd-loader-1.3.208-1-x86_64                                                                    135.0 KiB   223 KiB/s 00:01 [------------------------------------------------------------------------------------] 100%
 vulkan-icd-loader-1.3.208-1-x86_64                                                                          127.8 KiB   264 KiB/s 00:00 [------------------------------------------------------------------------------------] 100%
 ffcall-2.4-1-x86_64                                                                                          64.5 KiB   136 KiB/s 00:00 [------------------------------------------------------------------------------------] 100%
 libsynctex-2021.59745-2-x86_64                                                                               51.9 KiB   139 KiB/s 00:00 [------------------------------------------------------------------------------------] 100%
 python-markupsafe-2.1.0-1-x86_64                                                                             18.5 KiB  50.8 KiB/s 00:00 [------------------------------------------------------------------------------------] 100%
 texlive-fontsextra-2021.62623-1-any                                                                         508.8 MiB  9.16 MiB/s 00:56 [------------------------------------------------------------------------------------] 100%
 texlive-core-2021.62793-1-any                                                                               149.0 MiB  2.22 MiB/s 01:07 [------------------------------------------------------------------------------------] 100%
 chromium-99.0.4844.82-1-x86_64                                                                               81.6 MiB  1169 KiB/s 01:11 [------------------------------------------------------------------------------------] 100%
 Total (16/16)                                                                                               777.3 MiB  10.9 MiB/s 01:12 [------------------------------------------------------------------------------------] 100%
(16/16) checking keys in keyring                                                                                                         [------------------------------------------------------------------------------------] 100%
(16/16) checking package integrity                                                                                                       [------------------------------------------------------------------------------------] 100%
(16/16) loading package files                                                                                                            [------------------------------------------------------------------------------------] 100%
(16/16) checking for file conflicts                                                                                                      [------------------------------------------------------------------------------------] 100%
(16/16) checking available disk space                                                                                                    [------------------------------------------------------------------------------------] 100%
:: Processing package changes...
( 1/16) upgrading apache                                                                                                                 [------------------------------------------------------------------------------------] 100%
( 2/16) upgrading vulkan-icd-loader                                                                                                      [------------------------------------------------------------------------------------] 100%
( 3/16) upgrading chromium                                                                                                               [------------------------------------------------------------------------------------] 100%
( 4/16) upgrading imagemagick                                                                                                            [------------------------------------------------------------------------------------] 100%
( 5/16) upgrading lib32-vulkan-icd-loader                                                                                                [------------------------------------------------------------------------------------] 100%
( 6/16) upgrading libsynctex                                                                                                             [------------------------------------------------------------------------------------] 100%
( 7/16) upgrading python-markupsafe                                                                                                      [------------------------------------------------------------------------------------] 100%
( 8/16) upgrading python-pyparsing                                                                                                       [------------------------------------------------------------------------------------] 100%
( 9/16) upgrading python-setuptools                                                                                                      [------------------------------------------------------------------------------------] 100%
(10/16) upgrading python-urllib3                                                                                                         [------------------------------------------------------------------------------------] 100%
(11/16) installing ffcall                                                                                                                [------------------------------------------------------------------------------------] 100%
(12/16) upgrading texlive-bin                                                                                                            [------------------------------------------------------------------------------------] 100%
(13/16) upgrading texlive-core                                                                                                           [------------------------------------------------------------------------------------] 100%
>>> updmap custom entries should go into /etc/texmf/web2c/updmap-local.cfg
>>> fmtutil custom entries should go into /etc/texmf/web2c/fmtutil-local.cnf
New optional dependencies for texlive-core
    wdiff: for texdiff
(14/16) upgrading texlive-bibtexextra                                                                                                    [------------------------------------------------------------------------------------] 100%
(15/16) upgrading texlive-fontsextra                                                                                                     [------------------------------------------------------------------------------------] 100%
(16/16) upgrading texlive-latexextra                                                                                                     [------------------------------------------------------------------------------------] 100%
New optional dependencies for texlive-latexextra
    inkscape: required for svg package [installed]
    texlive-genericextra: required for calctab package [installed]
    texlive-pictures: required for overpic package
ldconfig: /opt/cuda/lib64/libcufftw.so is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libcufftw.so.10 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libcufftw.so.10.7.1.112 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libcusolver.so is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libcusolver.so.11 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libcusolver.so.11.3.3.112 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libcusparse.so is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libcusparse.so.11 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libcusparse.so.11.7.2.112 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libnppicc.so is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libnppicc.so.11 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /opt/cuda/lib64/libnppicc.so.11.6.2.112 is not an ELF file - it has the wrong magic bytes at the start.

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ldconfig: /opt/cuda/lib64/libnppist.so.11 is not an ELF file - it has the wrong magic bytes at the start.

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ldconfig: /opt/cuda/lib64/libnvToolsExt.so.1.0.0 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: file /usr/lib32/libasan.so is truncated

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ldconfig: File /usr/lib32/libgcc_s.so.1 is empty, not checked.
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ldconfig: File /usr/lib32/libgobject-2.0.so.0.7000.4 is empty, not checked.
ldconfig: file /usr/lib/libasan.so is truncated

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ldconfig: file /usr/lib/libasan.so.6.0.0 is truncated

ldconfig: file /usr/lib/libgdruntime.so is truncated

ldconfig: file /usr/lib/libgdruntime.so.2 is truncated

ldconfig: file /usr/lib/libgdruntime.so.2.0.0 is truncated

ldconfig: file /usr/lib/libgfortran.so is truncated

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ldconfig: File /usr/lib/libgomp.so is empty, not checked.
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ldconfig: File /usr/lib/libgettextsrc-0.21.so is empty, not checked.
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ldconfig: file /usr/lib/libgio-2.0.so is truncated

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ldconfig: file /usr/lib/libgio-2.0.so.0.7000.4 is truncated

ldconfig: file /usr/lib/libglib-2.0.so is truncated

ldconfig: file /usr/lib/libglib-2.0.so.0 is truncated

ldconfig: file /usr/lib/libglib-2.0.so.0.7000.4 is truncated

ldconfig: file /usr/lib/libgobject-2.0.so is truncated

ldconfig: file /usr/lib/libgobject-2.0.so.0 is truncated

ldconfig: file /usr/lib/libgobject-2.0.so.0.7000.4 is truncated

ldconfig: file /usr/lib/libfwupdplugin.so is truncated

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ldconfig: File /usr/lib/libcc1.so is empty, not checked.
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ldconfig: /usr/lib/libLTO.so is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /usr/lib/libLTO.so.13 is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /usr/lib/libRemarks.so is not an ELF file - it has the wrong magic bytes at the start.

ldconfig: /usr/lib/libRemarks.so.13 is not an ELF file - it has the wrong magic bytes at the start.

:: Running post-transaction hooks...
( 1/13) Reloading system manager configuration...
  Skipped: Running in chroot.
( 2/13) Creating temporary files...
Failed to open file "/sys/devices/system/cpu/microcode/reload": Read-only file system
error: command failed to execute correctly
( 3/13) Arming ConditionNeedsUpdate...
( 4/13) Cleaning pacman cache...

==> finished: 11 packages removed (disk space saved: 102.17 MiB)
( 5/13) Warn about old perl modules
( 6/13) Updating fontconfig cache...
error: command terminated by signal 7: Bus error
( 7/13) Updating 32-bit fontconfig cache...
/usr/bin/fc-cache-32: error while loading shared libraries: /usr/lib32/libglib-2.0.so.0: file too short
error: command failed to execute correctly
( 8/13) Updating icon theme caches...
/usr/share/libalpm/scripts/gtk-update-icon-cache: line 10:  1216 Bus error               (core dumped) gtk-update-icon-cache -q "$f"
error: command failed to execute correctly
( 9/13) Updating TeXLive filename database...
(10/13) Updating the info directory file...
(11/13) Updating TeXLive format files...
open(luajithbtex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(pdftex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(luahbtex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(xetex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(mptopdf.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(csplain.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(etex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(xelatex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(latex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(pdfetex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(pdflatex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(cslatex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(pdfcslatex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(pdfmex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(cont-en.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(cont-en.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(pdfcsplain.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(mex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(lualatex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
open(utf8mex.log) failed, not copying: No such file or directory at /usr/share/tlpkg/TeXLive/TLUtils.pm line 1308.
fmtutil [ERROR]: running `luajithbtex -ini   -jobname=luajithbtex -progname=luajithbtex luatex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log luajithbtex.log to: /var/lib/texmf/web2c/luajithbtex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=pdftex -progname=pdftex -translate-file=cp227.tcx *pdfetex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log pdftex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `luahbtex -ini   -jobname=luahbtex -progname=luahbtex luatex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log luahbtex.log to: /var/lib/texmf/web2c/luahbtex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `xetex -ini   -jobname=xetex -progname=xetex -etex xetex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log xetex.log to: /var/lib/texmf/web2c/xetex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=mptopdf -progname=context -translate-file=cp227.tcx mptopdf.tex </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log mptopdf.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=csplain -progname=csplain -etex -enc csplain-utf8.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log csplain.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=etex -progname=etex -translate-file=cp227.tcx *etex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log etex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `xetex -ini   -jobname=xelatex -progname=xelatex -etex xelatex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log xelatex.log to: /var/lib/texmf/web2c/xetex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=latex -progname=latex -translate-file=cp227.tcx *latex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log latex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=pdfetex -progname=pdfetex -translate-file=cp227.tcx *pdfetex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log pdfetex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=pdflatex -progname=pdflatex -translate-file=cp227.tcx *pdflatex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log pdflatex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=cslatex -progname=cslatex -etex cslatex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log cslatex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=pdfcslatex -progname=pdfcslatex -etex cslatex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log pdfcslatex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=pdfmex -progname=pdfmex -translate-file=cp227.tcx *pdfmex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log pdfmex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=cont-en -progname=context -8bit *cont-en.mkii </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log cont-en.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `xetex -ini   -jobname=cont-en -progname=context -8bit *cont-en.mkii </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log cont-en.log to: /var/lib/texmf/web2c/xetex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=pdfcsplain -progname=pdfcsplain -etex -enc csplain-utf8.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log pdfcsplain.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `xetex -ini   -jobname=pdfcsplain -progname=pdfcsplain -etex csplain.ini </dev/null' return status: 135
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=mex -progname=mex -translate-file=cp227.tcx *mex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log mex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `luahbtex -ini   -jobname=lualatex -progname=lualatex lualatex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log lualatex.log to: /var/lib/texmf/web2c/luahbtex
fmtutil [ERROR]: returning error due to option --strict
fmtutil [ERROR]: running `pdftex -ini   -jobname=utf8mex -progname=utf8mex -enc *utf8mex.ini </dev/null' return status: 135
fmtutil [ERROR]: failed to copy log utf8mex.log to: /var/lib/texmf/web2c/pdftex
fmtutil [ERROR]: returning error due to option --strict
error: command failed to execute correctly
(12/13) Updating TeXLive font maps...
(13/13) Updating the desktop file MIME type cache...
error: command terminated by signal 7: Bus error

This is not what was suggested. Try the proper way (in case you are lucky and this helps…).

1 Like

You were still getting i/o errors after that point.

There is something very wrong with your disk or filesystem.

Have you tried running btrfs check on it?

1 Like

And smart test?
https://wiki.archlinux.org/title/S.M.A.R.T.#Run_a_test

1 Like

First of all, you’re all awesome, thank you. <3

In order of what I did, I hope the formatting is somewhat readable:

Yeah, I saw those errors too and they most definitely look scary given your comment earlier.

btrfs check
[liveuser@eos-2021.12.17 ~]$ sudo btrfs check /dev/sdb2
Opening filesystem to check...
Checking filesystem on /dev/sdb2
UUID: 32166223-8f4f-4f69-9149-fe979df93e58
[1/7] checking root items
[2/7] checking extents
[3/7] checking free space cache
[4/7] checking fs roots
[5/7] checking only csums items (without verifying data)
[6/7] checking root refs
[7/7] checking quota groups
Rescan hasn't been initialzied, a difference in qgroup accounting is expected
found 985232412672 bytes used, no error found
total csum bytes: 956278900
total tree bytes: 3899736064
total fs tree bytes: 2444902400
total extent tree bytes: 259571712
btree space waste bytes: 707837395
file data blocks allocated: 1332299390976
 referenced 1206903402496
[liveuser@eos-2021.12.17 ~]$ 
 

Looks fine? Let me know if I should check more specific arguments.

I did run (short) tests a few days ago and it looked fine. A little bit used up but passed all the tests.

Below results from smartctl -t short /dev/sdb

smartctl
[liveuser@eos-2021.12.17 ~]$ sudo smartctl -c /dev/sdb
smartctl 7.2 2020-12-30 r5155 [x86_64-linux-5.15.8-arch1-1] (local build)
Copyright (C) 2002-20, Bruce Allen, Christian Franke, www.smartmontools.org

=== START OF READ SMART DATA SECTION ===
General SMART Values:
Offline data collection status:  (0x00)	Offline data collection activity
					was never started.
					Auto Offline Data Collection: Disabled.
Self-test execution status:      (   0)	The previous self-test routine completed
					without error or no self-test has ever 
					been run.
Total time to complete Offline 
data collection: 		(    0) seconds.
Offline data collection
capabilities: 			 (0x53) SMART execute Offline immediate.
					Auto Offline data collection on/off support.
					Suspend Offline collection upon new
					command.
					No Offline surface scan supported.
					Self-test supported.
					No Conveyance Self-test supported.
					Selective Self-test supported.
SMART capabilities:            (0x0003)	Saves SMART data before entering
					power-saving mode.
					Supports SMART auto save timer.
Error logging capability:        (0x01)	Error logging supported.
					General Purpose Logging supported.
Short self-test routine 
recommended polling time: 	 (   2) minutes.
Extended self-test routine
recommended polling time: 	 (  85) minutes.
SCT capabilities: 	       (0x003d)	SCT Status supported.
					SCT Error Recovery Control supported.
					SCT Feature Control supported.
					SCT Data Table supported.

[liveuser@eos-2021.12.17 ~]$ sudo smartctl -t short /dev/sdb
smartctl 7.2 2020-12-30 r5155 [x86_64-linux-5.15.8-arch1-1] (local build)
Copyright (C) 2002-20, Bruce Allen, Christian Franke, www.smartmontools.org

=== START OF OFFLINE IMMEDIATE AND SELF-TEST SECTION ===
Sending command: "Execute SMART Short self-test routine immediately in off-line mode".
Drive command "Execute SMART Short self-test routine immediately in off-line mode" successful.
Testing has begun.
Please wait 2 minutes for test to complete.
Test will complete after Mon Mar 21 17:57:21 2022 UTC
Use smartctl -X to abort test.
[liveuser@eos-2021.12.17 ~]$ sudo smartctl -H /dev/sdb
smartctl 7.2 2020-12-30 r5155 [x86_64-linux-5.15.8-arch1-1] (local build)
Copyright (C) 2002-20, Bruce Allen, Christian Franke, www.smartmontools.org

=== START OF READ SMART DATA SECTION ===
SMART overall-health self-assessment test result: PASSED

[liveuser@eos-2021.12.17 ~]$ sudo smartctl -l selftest /dev/sdb
smartctl 7.2 2020-12-30 r5155 [x86_64-linux-5.15.8-arch1-1] (local build)
Copyright (C) 2002-20, Bruce Allen, Christian Franke, www.smartmontools.org

=== START OF READ SMART DATA SECTION ===
SMART Self-test log structure revision number 1
Num  Test_Description    Status                  Remaining  LifeTime(hours)  LBA_of_first_error
# 1  Short offline       Completed without error       00%     11726         -
# 2  Short offline       Completed without error       00%     11723         -
# 3  Short offline       Completed without error       00%     11680         -

[liveuser@eos-2021.12.17 ~]$ sudo smartctl -a /dev/sdb
smartctl 7.2 2020-12-30 r5155 [x86_64-linux-5.15.8-arch1-1] (local build)
Copyright (C) 2002-20, Bruce Allen, Christian Franke, www.smartmontools.org

=== START OF INFORMATION SECTION ===
Model Family:     Samsung based SSDs
Device Model:     Samsung SSD 860 EVO 1TB
Serial Number:    S4X6NF0MC08517X
LU WWN Device Id: 5 002538 e49c69292
Firmware Version: RVT04B6Q
User Capacity:    1,000,204,886,016 bytes [1.00 TB]
Sector Size:      512 bytes logical/physical
Rotation Rate:    Solid State Device
Form Factor:      2.5 inches
TRIM Command:     Available, deterministic, zeroed
Device is:        In smartctl database [for details use: -P show]
ATA Version is:   ACS-4 T13/BSR INCITS 529 revision 5
SATA Version is:  SATA 3.2, 6.0 Gb/s (current: 6.0 Gb/s)
Local Time is:    Mon Mar 21 17:59:48 2022 UTC
SMART support is: Available - device has SMART capability.
SMART support is: Enabled

=== START OF READ SMART DATA SECTION ===
SMART overall-health self-assessment test result: PASSED

General SMART Values:
Offline data collection status:  (0x00)	Offline data collection activity
					was never started.
					Auto Offline Data Collection: Disabled.
Self-test execution status:      (   0)	The previous self-test routine completed
					without error or no self-test has ever 
					been run.
Total time to complete Offline 
data collection: 		(    0) seconds.
Offline data collection
capabilities: 			 (0x53) SMART execute Offline immediate.
					Auto Offline data collection on/off support.
					Suspend Offline collection upon new
					command.
					No Offline surface scan supported.
					Self-test supported.
					No Conveyance Self-test supported.
					Selective Self-test supported.
SMART capabilities:            (0x0003)	Saves SMART data before entering
					power-saving mode.
					Supports SMART auto save timer.
Error logging capability:        (0x01)	Error logging supported.
					General Purpose Logging supported.
Short self-test routine 
recommended polling time: 	 (   2) minutes.
Extended self-test routine
recommended polling time: 	 (  85) minutes.
SCT capabilities: 	       (0x003d)	SCT Status supported.
					SCT Error Recovery Control supported.
					SCT Feature Control supported.
					SCT Data Table supported.

SMART Attributes Data Structure revision number: 1
Vendor Specific SMART Attributes with Thresholds:
ID# ATTRIBUTE_NAME          FLAG     VALUE WORST THRESH TYPE      UPDATED  WHEN_FAILED RAW_VALUE
  5 Reallocated_Sector_Ct   0x0033   100   100   010    Pre-fail  Always       -       0
  9 Power_On_Hours          0x0032   097   097   000    Old_age   Always       -       11726
 12 Power_Cycle_Count       0x0032   099   099   000    Old_age   Always       -       29
177 Wear_Leveling_Count     0x0013   096   096   000    Pre-fail  Always       -       63
179 Used_Rsvd_Blk_Cnt_Tot   0x0013   100   100   010    Pre-fail  Always       -       0
181 Program_Fail_Cnt_Total  0x0032   100   100   010    Old_age   Always       -       0
182 Erase_Fail_Count_Total  0x0032   100   100   010    Old_age   Always       -       0
183 Runtime_Bad_Block       0x0013   100   100   010    Pre-fail  Always       -       0
187 Uncorrectable_Error_Cnt 0x0032   100   100   000    Old_age   Always       -       0
190 Airflow_Temperature_Cel 0x0032   069   050   000    Old_age   Always       -       31
195 ECC_Error_Rate          0x001a   200   200   000    Old_age   Always       -       0
199 CRC_Error_Count         0x003e   100   100   000    Old_age   Always       -       0
235 POR_Recovery_Count      0x0012   099   099   000    Old_age   Always       -       6
241 Total_LBAs_Written      0x0032   099   099   000    Old_age   Always       -       71994778396

SMART Error Log Version: 1
No Errors Logged

SMART Self-test log structure revision number 1
Num  Test_Description    Status                  Remaining  LifeTime(hours)  LBA_of_first_error
# 1  Short offline       Completed without error       00%     11726         -
# 2  Short offline       Completed without error       00%     11723         -
# 3  Short offline       Completed without error       00%     11680         -

SMART Selective self-test log data structure revision number 1
 SPAN  MIN_LBA  MAX_LBA  CURRENT_TEST_STATUS
    1        0        0  Not_testing
    2        0        0  Not_testing
    3        0        0  Not_testing
    4        0        0  Not_testing
    5        0        0  Not_testing
  256        0    65535  Read_scanning was never started
Selective self-test flags (0x0):
  After scanning selected spans, do NOT read-scan remainder of disk.
If Selective self-test is pending on power-up, resume after 0 minute delay.

[liveuser@eos-2021.12.17 ~]$ 

Sorry, I described how I ended up using that instead:

I’m still running into that exact same issue when following the wiki to the letter:

Summary
[liveuser@eos-2021.12.17 ~]$ sudo mount /dev/sdb2 /mnt -o subvol=@
[liveuser@eos-2021.12.17 ~]$ df -h
Filesystem      Size  Used Avail Use% Mounted on
dev              16G     0   16G   0% /dev
run              16G  169M   16G   2% /run
/dev/sde        1.9G  1.9G     0 100% /run/archiso/bootmnt
cowspace         10G  157M  9.9G   2% /run/archiso/cowspace
/dev/loop0      1.7G  1.7G     0 100% /run/archiso/airootfs
airootfs         10G  157M  9.9G   2% /
tmpfs            16G     0   16G   0% /dev/shm
tmpfs            16G  9.1M   16G   1% /tmp
tmpfs           3.2G   64K  3.2G   1% /run/user/1000
/dev/sdb2       932G  919G   11G  99% /mnt
[liveuser@eos-2021.12.17 ~]$ sudo mount -t proc proc /mnt/proc
[liveuser@eos-2021.12.17 ~]$ sudo mount --rbind /sys /mnt/sys
[liveuser@eos-2021.12.17 ~]$ sudo ount --rbind /dev /mnt/dev
sudo: ount: command not found
[liveuser@eos-2021.12.17 ~]$ sudo mount --rbind /dev /mnt/dev
[liveuser@eos-2021.12.17 ~]$ sudo pacman --sysroot /mnt -Syu
:: Synchronizing package databases...
 core.db failed to download
 extra.db failed to download
 community.db failed to download
 multilib.db failed to download
error: failed retrieving file 'community.db' from mirror.luzea.de : Could not resolve host: mirror.luzea.de
warning: too many errors from mirror.luzea.de, skipping for the remainder of this transaction
error: failed retrieving file 'multilib.db' from mirror.luzea.de : Could not resolve host: mirror.luzea.de
error: failed retrieving file 'extra.db' from mirror.luzea.de : Could not resolve host: mirror.luzea.de
error: failed retrieving file 'community.db' from mirror.moson.org : Could not resolve host: mirror.moson.org
warning: too many errors from mirror.moson.org, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from mirror.luzea.de : Could not resolve host: mirror.luzea.de
error: failed retrieving file 'multilib.db' from mirror.moson.org : Could not resolve host: mirror.moson.org
error: failed retrieving file 'extra.db' from mirror.moson.org : Could not resolve host: mirror.moson.org
error: failed retrieving file 'community.db' from mirror.ubrco.de : Could not resolve host: mirror.ubrco.de
warning: too many errors from mirror.ubrco.de, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from mirror.ubrco.de : Could not resolve host: mirror.ubrco.de
error: failed retrieving file 'multilib.db' from mirror.ubrco.de : Could not resolve host: mirror.ubrco.de
error: failed retrieving file 'extra.db' from mirror.ubrco.de : Could not resolve host: mirror.ubrco.de
error: failed retrieving file 'community.db' from mirror.chaoticum.net : Could not resolve host: mirror.chaoticum.net
warning: too many errors from mirror.chaoticum.net, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from mirror.chaoticum.net : Could not resolve host: mirror.chaoticum.net
error: failed retrieving file 'multilib.db' from mirror.chaoticum.net : Could not resolve host: mirror.chaoticum.net
error: failed retrieving file 'extra.db' from mirror.chaoticum.net : Could not resolve host: mirror.chaoticum.net
error: failed retrieving file 'community.db' from mirror.f4st.host : Could not resolve host: mirror.f4st.host
warning: too many errors from mirror.f4st.host, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from mirror.f4st.host : Could not resolve host: mirror.f4st.host
error: failed retrieving file 'multilib.db' from mirror.f4st.host : Could not resolve host: mirror.f4st.host
error: failed retrieving file 'extra.db' from mirror.f4st.host : Could not resolve host: mirror.f4st.host
error: failed retrieving file 'community.db' from ftp.halifax.rwth-aachen.de : Could not resolve host: ftp.halifax.rwth-aachen.de
warning: too many errors from ftp.halifax.rwth-aachen.de, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from ftp.halifax.rwth-aachen.de : Could not resolve host: ftp.halifax.rwth-aachen.de
error: failed retrieving file 'multilib.db' from ftp.halifax.rwth-aachen.de : Could not resolve host: ftp.halifax.rwth-aachen.de
error: failed retrieving file 'extra.db' from ftp.halifax.rwth-aachen.de : Could not resolve host: ftp.halifax.rwth-aachen.de
error: failed retrieving file 'community.db' from mirror.pseudoform.org : Could not resolve host: mirror.pseudoform.org
warning: too many errors from mirror.pseudoform.org, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from mirror.pseudoform.org : Could not resolve host: mirror.pseudoform.org
error: failed retrieving file 'multilib.db' from mirror.pseudoform.org : Could not resolve host: mirror.pseudoform.org
error: failed retrieving file 'extra.db' from mirror.pseudoform.org : Could not resolve host: mirror.pseudoform.org
error: failed retrieving file 'community.db' from de.arch.mirror.kescher.at : Could not resolve host: de.arch.mirror.kescher.at
warning: too many errors from de.arch.mirror.kescher.at, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from de.arch.mirror.kescher.at : Could not resolve host: de.arch.mirror.kescher.at
error: failed retrieving file 'multilib.db' from de.arch.mirror.kescher.at : Could not resolve host: de.arch.mirror.kescher.at
error: failed retrieving file 'extra.db' from de.arch.mirror.kescher.at : Could not resolve host: de.arch.mirror.kescher.at
error: failed retrieving file 'community.db' from phinau.de : Could not resolve host: phinau.de
warning: too many errors from phinau.de, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from phinau.de : Could not resolve host: phinau.de
error: failed retrieving file 'multilib.db' from phinau.de : Could not resolve host: phinau.de
error: failed retrieving file 'extra.db' from phinau.de : Could not resolve host: phinau.de
error: failed retrieving file 'community.db' from archlinux.thaller.ws : Could not resolve host: archlinux.thaller.ws
warning: too many errors from archlinux.thaller.ws, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from archlinux.thaller.ws : Could not resolve host: archlinux.thaller.ws
error: failed retrieving file 'multilib.db' from archlinux.thaller.ws : Could not resolve host: archlinux.thaller.ws
error: failed retrieving file 'extra.db' from archlinux.thaller.ws : Could not resolve host: archlinux.thaller.ws
error: failed retrieving file 'community.db' from arch.jensgutermuth.de : Could not resolve host: arch.jensgutermuth.de
warning: too many errors from arch.jensgutermuth.de, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from arch.jensgutermuth.de : Could not resolve host: arch.jensgutermuth.de
error: failed retrieving file 'multilib.db' from arch.jensgutermuth.de : Could not resolve host: arch.jensgutermuth.de
error: failed retrieving file 'extra.db' from arch.jensgutermuth.de : Could not resolve host: arch.jensgutermuth.de
error: failed retrieving file 'community.db' from mirrors.n-ix.net : Could not resolve host: mirrors.n-ix.net
warning: too many errors from mirrors.n-ix.net, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from mirrors.n-ix.net : Could not resolve host: mirrors.n-ix.net
error: failed retrieving file 'multilib.db' from mirrors.n-ix.net : Could not resolve host: mirrors.n-ix.net
error: failed retrieving file 'extra.db' from mirrors.n-ix.net : Could not resolve host: mirrors.n-ix.net
error: failed retrieving file 'community.db' from packages.oth-regensburg.de : Could not resolve host: packages.oth-regensburg.de
warning: too many errors from packages.oth-regensburg.de, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from packages.oth-regensburg.de : Could not resolve host: packages.oth-regensburg.de
error: failed retrieving file 'multilib.db' from packages.oth-regensburg.de : Could not resolve host: packages.oth-regensburg.de
error: failed retrieving file 'extra.db' from packages.oth-regensburg.de : Could not resolve host: packages.oth-regensburg.de
error: failed retrieving file 'community.db' from archlinux.homeinfo.de : Could not resolve host: archlinux.homeinfo.de
warning: too many errors from archlinux.homeinfo.de, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from archlinux.homeinfo.de : Could not resolve host: archlinux.homeinfo.de
error: failed retrieving file 'multilib.db' from archlinux.homeinfo.de : Could not resolve host: archlinux.homeinfo.de
error: failed retrieving file 'extra.db' from archlinux.homeinfo.de : Could not resolve host: archlinux.homeinfo.de
error: failed retrieving file 'community.db' from mirrors.xtom.de : Could not resolve host: mirrors.xtom.de
warning: too many errors from mirrors.xtom.de, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from mirrors.xtom.de : Could not resolve host: mirrors.xtom.de
error: failed retrieving file 'multilib.db' from mirrors.xtom.de : Could not resolve host: mirrors.xtom.de
error: failed retrieving file 'extra.db' from mirrors.xtom.de : Could not resolve host: mirrors.xtom.de
error: failed retrieving file 'community.db' from mirror.checkdomain.de : Could not resolve host: mirror.checkdomain.de
warning: too many errors from mirror.checkdomain.de, skipping for the remainder of this transaction
error: failed retrieving file 'core.db' from mirror.checkdomain.de : Could not resolve host: mirror.checkdomain.de
error: failed retrieving file 'multilib.db' from mirror.checkdomain.de : Could not resolve host: mirror.checkdomain.de
error: failed retrieving file 'extra.db' from mirror.checkdomain.de : Could not resolve host: mirror.checkdomain.de
error: failed to synchronize all databases (invalid url for server)
[liveuser@eos-2021.12.17 ~]$ 
[liveuser@eos-2021.12.17 ~]$ ping mirror.luzea.de
PING mirror.luzea.de(azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525)) 56 data bytes
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=1 ttl=59 time=14.2 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=2 ttl=59 time=13.6 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=3 ttl=59 time=13.8 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=4 ttl=59 time=13.8 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=5 ttl=59 time=13.7 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=6 ttl=59 time=13.7 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=7 ttl=59 time=13.8 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=8 ttl=59 time=13.5 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=9 ttl=59 time=13.7 ms
64 bytes from azurite.luzea.de (2a03:4000:53:d52:44ba:6bff:fe77:f525): icmp_seq=10 ttl=59 time=13.8 ms
^C
--- mirror.luzea.de ping statistics ---
10 packets transmitted, 10 received, 0% packet loss, time 9014ms
rtt min/avg/max/mdev = 13.525/13.764/14.234/0.182 ms
[liveuser@eos-2021.12.17 ~]$ 

Your disk is very nearly entirely filled. You might want to recover some space then, given

reinstall all packages.

You should also run a RAM test; silent filesystem corruption can happen if there’s an issue with your RAM.

1 Like

Just to be clear:

  1. Free up space
  2. Reinstall all packages via pacman -Qqn | pacman -S -
  3. Hopefully maybe profit and then throw memtest86 at it over night?

I comment on this:
And since it’s btrfs, if you just delete data, it will probably leave those chunks partially filled and therefore allocated. You may need more unallocated space.
Check with btrfs fi usage / free space.

If you’re lucky, you may not have to balance your filesystem or span to another device.

1 Like

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